Question: de novo assembly in Galaxy using multiple transcriptomes
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gravatar for kr_3487
10 months ago by
kr_34870
kr_34870 wrote:

I want to do de novo assembly of about 13 fferent transcriptome libraries however in Trinity I found the input option for a single transcriptome data. Please suggest me any alternate approach.

rna-seq • 218 views
ADD COMMENTlink modified 10 months ago by Jennifer Hillman Jackson24k • written 10 months ago by kr_34870
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gravatar for Jennifer Hillman Jackson
10 months ago by
United States
Jennifer Hillman Jackson24k wrote:

Hello,

Trinity is modeled differently than many of the other tools wrapped for Galaxy as there is no multiple input selection option (that creates the same number of distinct jobs). Instead, the input option is to assemble a single transcriptome per job execution run.

For batch input/jobs, the tool could be added to a Workflow multiple times along with multiple distinct input selections.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 10 months ago by Jennifer Hillman Jackson24k
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