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Question: error running BUSCO in Galaxy
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gravatar for keren.maor
5 months ago by
keren.maor • 40
keren.maor • 40 wrote:

Dear all, I'm trying to run BUSCO via Galaxy (Melbourne server) to asses my de novo assembled transcriptome, but keep getting error message :" An error occurred with this dataset: /mnt/galaxy/tmp/job_working_directory/000/100/100295/tool_script.sh: line 9: run_BUSCO.py: command not found". Does anyone came across this? any idea what I should do? Thank you! by the way, I tried to report this bug in the Galaxy but got error :"An error occurred sending the report by email: Error reporting has been disabled for this galaxy instance".
assembly busco galaxy rna-seq de novo • 222 views
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modified 5 months ago by Jennifer Hillman Jackson ♦ 25k • written 5 months ago by keren.maor • 40
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gravatar for Jennifer Hillman Jackson
5 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hi,

This is a server-side configuration issue. The administrators of the server need to address the problem.

If you haven't tried the tool again, do so now. They might have fixed it.

If still a problem, this is the server you are working at, correct? https://galaxy-mel.genome.edu.au/ If so, then contact information can be found here: https://galaxyproject.org/public-galaxy-servers/ >> https://galaxyproject.org/public-galaxy-servers/gvl-mel/

Thanks! Jen, Galaxy team
ADD COMMENT • link written 5 months ago by Jennifer Hillman Jackson ♦ 25k
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