Question: de Novo assembly
1
gravatar for sameerdilipkhot
2.4 years ago by
sameerdilipkhot20 wrote:

 

 

Hi,

I am new to galaxy and its tool shed. I have been looking for genome assemblers and came across a tutorial  for NGS velvet assembler that should help in de novo assembly.  But I can't see this tool in the toolshed. Please suggest how a de novo can be run on the server as I haven't installed galaxy on my PC.

Thank you,

SDK

 

 

galaxy • 688 views
ADD COMMENTlink modified 2.4 years ago by Guy Reeves1.0k • written 2.4 years ago by sameerdilipkhot20
2
gravatar for Guy Reeves
2.4 years ago by
Guy Reeves1.0k
Germany
Guy Reeves1.0k wrote:

HI SDK

I guess you have checked the main toolshed.  However there is another one which has a lot of de Novo tools not currently on main. It is run by the journal Gigascience and features tools developed by the BGI.

http://gigatoolshed.net/repository

They also have a galaxy instance where you can try the tools out

http://gigagalaxy.net

Might be worth having a look at.  Thanks Guy

ADD COMMENTlink written 2.4 years ago by Guy Reeves1.0k
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