I want to merge at lot >40 of individual bam files into one.
Is there an easier way to do this than having to select each .bam file as an input?
In my work flows I use 'data collection lists' it would be great if there was a way to use the list to merge all files into one.
I can see that this has been thought of, see page 19and 20
As far as I can tell this really useful idea has not yet been implemented. Is this correct?
Are there other tools by which I could lists .bam or sam files so I can take them into a genotype/SNP calling tool?
Thanks In advance
Tool name: Merge BAM Files
Tool version: 1.1.2
Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/sam_merge/sam_merge2/1.1.2
ToolShed URL: https://toolshed.g2.bx.psu.edu/view/devteam/sam_merge