I have a bam file generated using a cached reference (not a user custom one). However if I sleet
'Choose the source for the reference list ' >Locally cached
'Using reference genome:' has no options.
Why is this are the cached references not suitable for this program?
Tool name: Realigner Target Creator
Tool version: 0.0.4
Tool ID: toolshed.g2.bx.psu.edu/repos/devteam/realigner_target_creator/gatk_realigner_target_creator/0.0.4
ToolShed URL: https://toolshed.g2.bx.psu.edu/view/devteam/realigner_target_creator