Question: "NGS: Picard (beta) Mark Duplicate reads" missing at Main
The new version of the tool is https://usegalaxy.org/root?tool_id=toolshed.g2.bx.psu.edu/repos/devteam/picard/picard_MarkDuplicates/1.126.0
The older versions are not removed but rather hidden. You can use them by starting a rerun on a dataset that has been created with the old version.
Thanks so much Martin.
Is it possible to get a direct link to "NGS: Picard (beta) Add or Replace Groups" as well?
I don't have a dataset that was created with the old version. Is there another way to access the old version?
You can use https://usegalaxy.org/root?tool_id=toolshed.g2.bx.psu.edu/repos/devteam/picard/rgPicardMarkDups/1.56.0 to get there directly.
However I recommend using the latest, bugs were fixed.