Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: RNA STAR job error
0
gravatar for k.makwana
12 months ago by
k.makwana • 20
k.makwana • 20 wrote:

Hello, I am trying to RNA STAR aligner on pair end reads with inbuilt index but I am getting error:

  Transcriptome.cpp:51:Transcriptome: exiting because of INPUT FILE error: could not open input file /cvmfs data.galaxyproject.org/managed/rn
error job rna-seq input hisat2 • 502 views
ADD COMMENT • link •
modified 12 months ago by Jennifer Hillman Jackson ♦ 25k • written 12 months ago by k.makwana • 20
0
gravatar for Jennifer Hillman Jackson
12 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

I've only seen this error come up when a reference annotation database was not given as an input but other options are selected that require it (example: filtering in known splice sites).

If that is not your use case or you are not sure, a bug report can be sent in when working at htttps:/usegalaxy.org.

https://galaxyproject.org/issues/#usage-problem-reporting

Thanks, Jen, Galaxy team
ADD COMMENT • link written 12 months ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 180 users visited in the last hour