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Question: Add reference genome index to RNA STAR tool
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gravatar for jlrosenkrantz
14 months ago by
jlrosenkrantz • 0
jlrosenkrantz • 0 wrote:

Hello, I would like to request that the rhesus macaque (RheMac8) genome reference index be added as a built-in index in the RNA STAR tool. In the tool it states "If your genome of interest is not listed, contact the Galaxy team". If this is not the correct place to make this kind of request, my apologies.

rna-seq • 360 views
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modified 14 months ago by Jennifer Hillman Jackson ♦ 25k • written 14 months ago by jlrosenkrantz • 0
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gravatar for Jennifer Hillman Jackson
14 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

This genome and most others that are from the last two most current builds per genome hosted by UCSC will be added. Follow here: https://github.com/galaxyproject/galaxy/issues/1470#issuecomment-208444904

But you do not have to wait. Upload the genome from UCSC into your history and use it now with tools as a Custom genome/build.

https://galaxyproject.org/support/ >> Preparing and using a Custom Reference Genome or Build

Thanks, Jen, Galaxy team
ADD COMMENT • link written 14 months ago by Jennifer Hillman Jackson ♦ 25k
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