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Question: RNA star fails on collection
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gravatar for Taamslab
9 months ago by
Taamslab • 0
Taamslab • 0 wrote:

Using RNA-Star on collection now results in the job "succeeding" but all alignments are empty and all the log files contain

"/galaxy-repl/main/jobdir/018/288/18288007/tool_script.sh: line 9: STAR: command not found"

Please advise
rna-seq alignment rna star • 305 views
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modified 9 months ago by Jennifer Hillman Jackson ♦ 25k • written 9 months ago by Taamslab • 0
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gravatar for Jennifer Hillman Jackson
9 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

The public Main Galaxy server at https://usegalaxy.org is presenting with job errors across many tools at this time. We are actively working to correct the issues.

Please follow this ticket for updates: https://biostar.usegalaxy.org/p/26580/

Once the server is corrected, retest your specific issue and comment here in your original post if the problems persist and we can troubleshoot the use case.

Thanks! Jen, Galaxy team
ADD COMMENT • link written 9 months ago by Jennifer Hillman Jackson ♦ 25k
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