Question: Listing genome reference
0
gravatar for tabory11
17 days ago by
tabory110
tabory110 wrote:

Hi, I would like to map reads against genome reference but my genome of interest is not listed. Is it possible to add the genome of triticum aestivum in the list?

Thanks,

alignment • 63 views
ADD COMMENTlink modified 14 days ago by Mesohexaploid 10 • written 17 days ago by tabory110
1
gravatar for Mesohexaploid
14 days ago by
Mesohexaploid 10 wrote:

Hello,

I am also interested in the addition of a wheat reference genome. From what I understand, genome additions can be requested here:

https://github.com/galaxyproject/galaxy/issues/1470

However, if you look at the thread, Triticum aestivum is already listed as being under review (since April 2016), hopefully it will eventually be added.

For now, it seems the only option is to upload it as a custom genome.

Regards

ADD COMMENTlink written 14 days ago by Mesohexaploid 10
1

Correct, wheat and several other genomes, in particular requested plant genomes, have not been indexed yet. The process to add new indexes is undergoing some changes but we expect to get this going again soon. All updates will be recorded on that ticket.

Custom genome FAQ: https://galaxyproject.org/learn/custom-genomes/

Thanks! Jen, Galaxy team

ADD REPLYlink modified 13 days ago • written 14 days ago by Jennifer Hillman Jackson23k
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