Question: Listing genome reference
gravatar for tabory11
12 months ago by
tabory110 wrote:

Hi, I would like to map reads against genome reference but my genome of interest is not listed. Is it possible to add the genome of triticum aestivum in the list?


alignment • 357 views
ADD COMMENTlink modified 12 months ago by Mesohexaploid 10 • written 12 months ago by tabory110
gravatar for Mesohexaploid
12 months ago by
Mesohexaploid 10 wrote:


I am also interested in the addition of a wheat reference genome. From what I understand, genome additions can be requested here:

However, if you look at the thread, Triticum aestivum is already listed as being under review (since April 2016), hopefully it will eventually be added.

For now, it seems the only option is to upload it as a custom genome.


ADD COMMENTlink written 12 months ago by Mesohexaploid 10

Correct, wheat and several other genomes, in particular requested plant genomes, have not been indexed yet. The process to add new indexes is undergoing some changes but we expect to get this going again soon. All updates will be recorded on that ticket.

Custom genome FAQ:

Thanks! Jen, Galaxy team

ADD REPLYlink modified 12 months ago • written 12 months ago by Jennifer Hillman Jackson25k
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