Question: No Galaxy Links in EBI SRA - Now what?
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mmfansler • 0 wrote:
I am trying to import SRA data (SRR1725164) to Galaxy using the Get Data > EBI SRA tool. However, the page for the run does not show any links under the fastq (galaxy) column. I assume that is where I would normally find a way to import (this is my first time using this). Since there is nothing there, how do I proceed?
I have the SRA Toolkit and am able to (slowly) download the file with fastq-dump, however, the file is huge and I think my internet connection is not going to be stable and fast enough to upload a >10GB file to Galaxy.
What are my options? Also, do I need to take any additional steps because the data is paired?
If context matters at all, I am hoping to run de novo assembly on this transcriptome data.
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modified 3.4 years ago
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Jennifer Hillman Jackson ♦ 25k
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3.4 years ago by
mmfansler • 0
