Question: De-novo assembly of a bacterial genome
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gravatar for ppurkayastha2010
9 weeks ago by
ppurkayastha201010 wrote:

I am trying to assemble a bacterial genome of length 8Mb in orione.crs4.it . I could successfully load the paired-end illumina dataset into the server, but I am unable to do the de-novo assembly for the paired end data using any of the programs.

Could anyone suggest if the tools are working in the galaxy server? or I am doing something wrong? Please share if there is any protocol for de-novo assembly of a bacterial genome?

ADD COMMENTlink modified 9 weeks ago by Jennifer Hillman Jackson22k • written 9 weeks ago by ppurkayastha201010
2
gravatar for Jennifer Hillman Jackson
9 weeks ago by
United States
Jennifer Hillman Jackson22k wrote:

Hello,

The fastq data probably needs to be assigned the correct datatype. Tools will not recognize inputs without this.

Support help:

Tutorials and publications related to assembly in Galaxy can be found here:

Thanks! Jen, Galaxy team

ADD COMMENTlink written 9 weeks ago by Jennifer Hillman Jackson22k
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