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Question: upload FTP fastq.gz files on new local galaxy installation, but they just sit there as grey (job waiting to run)
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gravatar for Guy Reeves
3.8 years ago by
Guy Reeves • 1.0k
Germany
Guy Reeves • 1.0k wrote:

HI 

I just installed a local version of Galaxy I have just tried to 'get data>upload file >chose local file>start'.  I can see the fastq.gz files I want on my disk they upload fine but just sit there in my history as grey (job waiting to run) fastq.gz files.

I was hoping that they would decompress and and go green like on the main server.  Have I failed to configure or activate the user  correctly? 

Any suggestions would be very gratefully appreciated.

Thanks

Guy 

 
ftp • 1.4k views
ADD COMMENT • link •
written 3.8 years ago by Guy Reeves • 1.0k

Hello reeves, you mentioned FTP in the question title and in the tag. Are you using it?

ADD REPLY • link written 3.8 years ago by Martin Čech ♦♦ 4.9k
0
gravatar for Guy Reeves
3.8 years ago by
Guy Reeves • 1.0k
Germany
Guy Reeves • 1.0k wrote:

 

HI Martin 

I think I did not have the FTP set up.

I needed to amend the following line in the config/galaxy.ini file

from 

#ftp_upload_dir =

to 

ftp_upload_dir = /home/galaxy/galaxy-dist/database/files

 

Now it all works fine 

Thanks

Guy
ADD COMMENT • link written 3.8 years ago by Guy Reeves • 1.0k
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