Question: local Galaxy server - can't upload any files
0
gravatar for kajocina
3.2 years ago by
kajocina0
European Union
kajocina0 wrote:

Dear Galaxy Community,

 

I just installed local Galaxy on my Linux (Ubuntu 14.04) for few tests. I am planning on developing a tool for my group and wanted to first try it out on my PC. However, after successful installation and running Galaxy, I entered the GUI on 127.0.0.1:8080 and tried without success to upload a local file from my disk.

I click on Get Data / Upload File from your computer, I choose a 5MB .csv file and wait until 100%. Then the file shows up in the History panel on the right and turns into red. This happens to all possible files or pasted-in data. The error returned is as follows:

Traceback (most recent call last):
  File "/home/XXX/Software/galaxy/tools/data_source/upload.py", line 18, in <module>
    import galaxy.model  # noqa
  File "/home/XXX/Software/galaxy/lib/galaxy/model/__init__.py", line 9, in <module>
    eggs.require("pexpect")
  File "/home/XXX/Software/galaxy/lib/galaxy/eggs/__init__.py", line 479, in require
    return c[req.project_name].require()
  File "/home/XXX/Software/galaxy/lib/galaxy/eggs/__init__.py", line 272, in require
    dists = self.resolve()
  File "/home/XXX/Software/galaxy/lib/galaxy/eggs/__init__.py", line 220, in resolve
    if e.args[1].key != e.args[0].key:
IndexError: tuple index out of range

 

Any ideas what could that be ? I am running Python 2.7.6.

 

Best regards,

Piotr

galaxy • 845 views
ADD COMMENTlink written 3.2 years ago by kajocina0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 166 users visited in the last hour