Question: local Galaxy server - can't upload any files
0
gravatar for kajocina
3.2 years ago by
kajocina • 0
European Union
kajocina • 0 wrote:

Dear Galaxy Community,

 

I just installed local Galaxy on my Linux (Ubuntu 14.04) for few tests. I am planning on developing a tool for my group and wanted to first try it out on my PC. However, after successful installation and running Galaxy, I entered the GUI on 127.0.0.1:8080 and tried without success to upload a local file from my disk.

I click on Get Data / Upload File from your computer, I choose a 5MB .csv file and wait until 100%. Then the file shows up in the History panel on the right and turns into red. This happens to all possible files or pasted-in data. The error returned is as follows:

Traceback (most recent call last):
  File "/home/XXX/Software/galaxy/tools/data_source/upload.py", line 18, in <module>
    import galaxy.model  # noqa
  File "/home/XXX/Software/galaxy/lib/galaxy/model/__init__.py", line 9, in <module>
    eggs.require("pexpect")
  File "/home/XXX/Software/galaxy/lib/galaxy/eggs/__init__.py", line 479, in require
    return c[req.project_name].require()
  File "/home/XXX/Software/galaxy/lib/galaxy/eggs/__init__.py", line 272, in require
    dists = self.resolve()
  File "/home/XXX/Software/galaxy/lib/galaxy/eggs/__init__.py", line 220, in resolve
    if e.args[1].key != e.args[0].key:
IndexError: tuple index out of range

 

Any ideas what could that be ? I am running Python 2.7.6.

 

Best regards,

Piotr

galaxy • 845 views
ADD COMMENT • link • written 3.2 years ago by kajocina • 0
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