I just installed some tools on a local galaxy instance, and soon after I received the error "Conda dependency seemingly installed but failed to build job environment." for any job I tried to run, regardless of uploading files, or using a simple tool from the toolshed. Restarting galaxy or removing the tools did not help.
The tools were " samtools_stats" by devteam, " samtools_idxstats" by devteam and "rmarkdown_samtools_flagstat" by mingchen0919.
The galaxy version is 17.09.
when I type "which conda" in bash I get no output.
Upon launching galaxy, there is a wall of text for each package saying
Requirement already satisfied:.....
Furthermore, the last message is
galaxy.tools.deps DEBUG 2018-03-22 15:28:03,620 Unable to find config file './dependency_resolvers_conf.xml'
EDIT: I checked some logs and turns out these messages have always been there, while the problem is recent. so it is likely unrelated.
Help is much appreciated!
EDIT2: Since I am not an informatician, and troubleshooting the issue myself would have taken too much time, I decided to update the server to version 18.01, and it solved the issue.
Ende gut, alles gut.