Hi,
I've recently installed galaxy locally on my computer, I got it run but I can't upload files to a data library. I tried to set up 'upload directory of files'. I created a folder outside of galaxy-dist and inserting the right path in the universe_wsgi.ini: library_import_dir = /home/jvdelarosa/galaxy/import
Every time the loading fails with this error message:
<?xml version="1.0" ?>
<traceback>
<sysinfo>
<language version="2.7.6">Python</language>
</sysinfo>
<stack>
<frame>
<module>weberror.evalexception.middleware</module>
<filename>/home/jvdelarosa/galaxy-dist/eggs/WebError-0.8a-py2.7.egg/weberror/evalexception/middleware.py</filename>
<line>364</line>
<function>respond</function>
<operation>app_iter = self.application(environ, detect_start_response)</operation>
<operation_context> try:
__traceback_supplement__ = errormiddleware.Supplement, self, environ
app_iter = self.application(environ, detect_start_response)
try:
return_iter = list(app_iter)
</operation_context>
</frame>
<frame>
<module>paste.recursive</module>
<filename>/home/jvdelarosa/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/recursive.py</filename>
<line>84</line>
<function>__call__</function>
<operation>return self.application(environ, start_response)</operation>
<operation_context> environ['paste.recursive.script_name'] = my_script_name
try:
return self.application(environ, start_response)
except ForwardRequestException, e:
middleware = CheckForRecursionMiddleware(
</operation_context>
</frame>
<frame>
<module>paste.httpexceptions</module>
<filename>/home/jvdelarosa/galaxy-dist/eggs/Paste-1.7.5.1-py2.7.egg/paste/httpexceptions.py</filename>
<line>633</line>
<function>__call__</function>
<operation>return self.application(environ, start_response)</operation>
<operation_context> []).append(HTTPException)
try:
return self.application(environ, start_response)
except HTTPException, exc:
return exc(environ, start_response)
</operation_context>
</frame>
<frame>
<module>galaxy.web.framework.base</module>
<filename>/home/jvdelarosa/galaxy-dist/lib/galaxy/web/framework/base.py</filename>
<line>132</line>
<function>__call__</function>
<operation>return self.handle_request( environ, start_response )</operation>
<operation_context> self.trace( message="Starting request" )
try:
return self.handle_request( environ, start_response )
finally:
self.trace( message="Handle request finished" )
</operation_context>
</frame>
<frame>
<module>galaxy.web.framework.base</module>
<filename>/home/jvdelarosa/galaxy-dist/lib/galaxy/web/framework/base.py</filename>
<line>190</line>
<function>handle_request</function>
<operation>body = method( trans, **kwargs )</operation>
<operation_context> kwargs.pop( '_', None )
try:
body = method( trans, **kwargs )
except Exception, e:
body = self.handle_controller_exception( e, trans, **kwargs )
</operation_context>
</frame>
<frame>
<module>galaxy.webapps.galaxy.controllers.library_common</module>
<filename>/home/jvdelarosa/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/library_common.py</filename>
<line>927</line>
<function>upload_library_dataset</function>
<operation>**kwd )</operation>
<operation_context> widgets=widgets,
replace_dataset=replace_dataset,
**kwd )
if created_outputs_dict:
if cntrller == 'api':
</operation_context>
</frame>
<frame>
<module>galaxy.webapps.galaxy.controllers.library_common</module>
<filename>/home/jvdelarosa/galaxy-dist/lib/galaxy/webapps/galaxy/controllers/library_common.py</filename>
<line>1049</line>
<function>upload_dataset</function>
<operation>state = tool.new_state( trans )</operation>
<operation_context> tool_id = 'upload1'
tool = trans.app.toolbox.get_tool( tool_id )
state = tool.new_state( trans )
errors = tool.update_state( trans, tool.inputs_by_page[0], state.inputs, kwd )
tool_params = state.inputs
</operation_context>
</frame>
</stack>
<exception>
<type>AttributeError</type>
<value>'NoneType' object has no attribute 'new_state'</value>
</exception>
</traceback>
I have been looking for a solution on the web, without success.
has someone any solution to fix this problem?
A lot of thanks
