Hello,
I'm just installed a galaxy server with a postgresql database and with proftpd for ftp upload. When I want to upload a file (with ftp or directly), I get a succesful message in the upload windows but the job is waiting to run.
This is a configuration problem ? or right acces problem ?
thanks for your help !!
I create a new job_conf.xml file and job starts :
the job_conf.xml file :
<?xml version="1.0"?>
<job_conf>
<plugins workers="32">
<plugin id="local" type="runner" load="galaxy.jobs.runners.local:LocalJobRunner" workers="4"/>
<plugin id="drmaa" type="runner" load="galaxy.jobs.runners.drmaa:DRMAAJobRunner">
</plugin>
</plugins>
<handlers>
<handler id="main"/>
</handlers>
<destinations default="local">
<destination id="local" runner="local"/>
<destination id="drmaa" runner="drmaa">
<param id="nativeSpecification">-l walltime=10:00:00,ncpus=32,mem=48GB</param>
<param id="-q">workq_p</param>
<env id="JAVA_OPTIONS">-XX:ParallelGCThreads=1</env>
<env id="JAVA_OPTIONS_NT">-XX:ParallelGCThreads=3</env>
<env id="JAVA_OPTIONS_FOR">-XX:ParallelGCThreads=4</env>
</destination>
</destinations>
</job_conf>
what happens when you click on the 'Refresh history' buton (circular arrows) in the top right hand corner?
Nothing. I always have "job is waiting to run"
I try to get data from UCSC and I have the same problem.
do you have any running processes as well?
do you test from the same server you have galaxy installed on? or are you connecting from your PC/laptop? If the latter, it could be a proxy problem?
The galaxy server is on a Supercomputers and I test it from my MAC with google chrome. The both are on the same network.
Do you have admin access to the Galaxy instance? If so, have a look in the log files immediately after submitting a job. I have this sort of issue when the connection between Galaxy and the scheduler we use on our cluster breaks (the logs then mention something related to that).
I check the server log (/var/log), I don't see anything. And when I launch an upload I get only this in the terminal :