Question: Mapping Tools To Destinations (Cluster vs. Local)
gravatar for danielfortin86
2.8 years ago by
United States
danielfortin86110 wrote:


I'm trying to configure my job_conf.xml to send all jobs to a SGE cluster. I can now execute most jobs successfully. However, since I have my galaxy installed in a local location (e.g. /opt/galaxy) instead of a network location, internal galaxy scripts do not execute correctly (e.g. Get Data->Upload File, which is since this local location is not present on the cluster. I was wondering if there's an easy way to route all of these jobs to the local job runner? Note that I don't want to move this galaxy on to a network location.

I found this page describing how to route jobs, ( but I'm not sure how I would isolate either only the jobs that require local galaxy code, or only the toolshed and custom tool xmls I've added to galaxy (other than laboriously listing them and their destinations under <tools> in job_conf.xml one by one). Is there an easier way?




cluster destinations job_conf • 717 views
ADD COMMENTlink written 2.8 years ago by danielfortin86110
gravatar for Hotz, Hans-Rudolf
2.8 years ago by
Hotz, Hans-Rudolf1.8k wrote:

I don't think, there is an easier way


ADD COMMENTlink written 2.8 years ago by Hotz, Hans-Rudolf1.8k
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 172 users visited in the last hour