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Question: can't load Fastq file
0
gravatar for ginlucks
3.9 years ago by
ginlucks • 10
European Union
ginlucks • 10 wrote:

Hi all,

 

I would use BWA tool but when I try to add  the fastq file by click on the menu below ''FASTQ file:'' it appears a small grey box with no voices or options.

I also try to upload the file clicking on get data--> Upload file from your computer and than try again but still nothing appens

is  it a visualization problem or have i make a mistake ?

Thank a lot for help
upload bwa visualization file • 1.1k views
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modified 3.0 years ago by moustafa.zakaria • 10 • written 3.9 years ago by ginlucks • 10
1
gravatar for Dannon Baker
3.9 years ago by
Dannon Baker ♦ 3.7k
United States
Dannon Baker ♦ 3.7k wrote:

Once you've uploaded your FASTQ file, click the little pencil icon on the dataset.  This will open up a page where you can set the datatype to 'fastqsanger' on the third tab.  This doesn't actually change your file, it just tells Galaxy more specifically what the format of the file is, something that's required for use in BWA.

After changing the datatype here and clicking save, you should be able to run BWA on this file.
ADD COMMENT • link written 3.9 years ago by Dannon Baker ♦ 3.7k
1
gravatar for ginlucks
3.9 years ago by
ginlucks • 10
European Union
ginlucks • 10 wrote:

it works!

 

thank you
ADD COMMENT • link written 3.9 years ago by ginlucks • 10
1
gravatar for moustafa.zakaria
3.0 years ago by
moustafa.zakaria • 10
moustafa.zakaria • 10 wrote:

thank you dannon

 
ADD COMMENT • link written 3.0 years ago by moustafa.zakaria • 10
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