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Question: running of the files after uploading
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gravatar for sinha.puja
14 months ago by
sinha.puja • 0
sinha.puja • 0 wrote:

Hi... I am unable to run the files after uploading. The uploading is done but on the left side one clock like sign exists and when I am clicking on that it shows the file is waiting to run.Please help and guide so that I can use tophat and also in tophat section the second option RNA-Seq FASTQ file when I am selecting multiple data sets it doesn't show anything, so how to select multiple files in that..????

galaxy • 356 views
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modified 14 months ago by Jennifer Hillman Jackson ♦ 25k • written 14 months ago by sinha.puja • 0
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gravatar for Jennifer Hillman Jackson
14 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

A gray dataset indicates a job is queued (waiting to run). Once loaded, datasets with the expected datatype will be present in the select list on tool forms. Tophat plus most tools that expect fastq data should be confirmed to be in fastqsanger format and then assigned that datatype (during upload or after, before using mapping tools).

Galaxy tutorials, including how to upload, format, and manipulate data:

Also see the help for checking/setting datatype metadata for files in the Support FAQs:

Hope this helps! Jen, Galaxy team
ADD COMMENT • link written 14 months ago by Jennifer Hillman Jackson ♦ 25k
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