Question: can't load Fastq file
0
gravatar for ginlucks
3.4 years ago by
ginlucks10
European Union
ginlucks10 wrote:

Hi all,

 

I would use BWA tool but when I try to add  the fastq file by click on the menu below ''FASTQ file:'' it appears a small grey box with no voices or options.

I also try to upload the file clicking on get data--> Upload file from your computer and than try again but still nothing appens

is  it a visualization problem or have i make a mistake ?

Thank a lot for help

upload bwa visualization file • 961 views
ADD COMMENTlink modified 2.5 years ago by moustafa.zakaria10 • written 3.4 years ago by ginlucks10
1
gravatar for Dannon Baker
3.4 years ago by
Dannon Baker3.7k
United States
Dannon Baker3.7k wrote:

Once you've uploaded your FASTQ file, click the little pencil icon on the dataset.  This will open up a page where you can set the datatype to 'fastqsanger' on the third tab.  This doesn't actually change your file, it just tells Galaxy more specifically what the format of the file is, something that's required for use in BWA.

After changing the datatype here and clicking save, you should be able to run BWA on this file.

ADD COMMENTlink written 3.4 years ago by Dannon Baker3.7k
1
gravatar for ginlucks
3.4 years ago by
ginlucks10
European Union
ginlucks10 wrote:

it works!

 

thank you

ADD COMMENTlink written 3.4 years ago by ginlucks10
1
gravatar for moustafa.zakaria
2.5 years ago by
moustafa.zakaria10 wrote:

thank you dannon

 

ADD COMMENTlink written 2.5 years ago by moustafa.zakaria10
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