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• Error while getting updates from the server
  Hi,   I am trying to run  Cuffdiff job. After uploading all the required files to my account's ...
• FASTQC not entering the running phase
  Hello, can somebody help/explain something to me? I've been trying to get galaxy to preform a Fas...
• Reference annotation GFT GFF3 problem with tool HISAT
  I got the following error while running htseq count: I think it is my gtf file problem. How to fi...
• Tool error "Remote job server indicated a problem running or monitoring this job"
  Hello, While running Cufflinks in Galaxy, I keep receiving the error "Remote job server indicat...
• Galaxy shows error while running tophat (deprecated tool, use HISAT2 instead)
  The galaxy websites, pops up following message frequently, Will I also miss the data currently be...
• Htseq-count error: [Errno 2] No such file or directory: 'name_sorted_alignment.bam'
  Dear all, I am facing this error while running HTseq-count on a BAM file obtained with Tophat: F...
• Slow Galaxy Server
  This is a followup to my previous post on this topic. The exact message (in red) that I see afte...
• An error occured while running the tool seqclust.
  I have convert: no decode delegate for this image format `PNG' @ error/constitute.c/ReadImage/50...
• tophat2 tool error
  I have this error while running tophat2 in mouse data   "Remote job server indicated a problem ...
• Remote job server indicated a problem running or monitoring this job.
  While doing cufflinks for my RNASeq data following error is coming, "Remote job server indicated ...
• Repeated Error With Tophat
  Hello- I am trying to use Galaxy to investigate gene expression differences among datasets. The...
• Tophat run wont work
  HiI have been trying to run tophat for a while pretty much all day getting errors I would like to...
• Variant Calling Free Bayes BamLeftAlign
  When trying to run Galaxy on the platform I keep having the same error message when using FreeBay...
• Dataset Error An error occured while running the tool upload1.
  Hi, I was able to download my data into the history panel ~63 Gb 20 shown 63 hidden all files...
• One Error While Installing Galaxy
  Hi, When I installed galaxy, one error message appeared, which said that ImportError: No module...
• Internal server error
  Hi everybody, I was wondering if the galaxy server experiences some issues at the moment. I coul...