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Question: Variant Calling Free Bayes BamLeftAlign
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gravatar for kry_8
10 months ago by
kry_8 • 10
kry_8 • 10 wrote:

When trying to run Galaxy on the platform I keep having the same error message when using FreeBayes and BamLeftAlign

Fatal error: Exit code 1 () freebayes: error while loading shared libraries: libbz2.so.1.0: cannot open shared object file: No such file or directory

Fatal error: Exit code 127 () bamleftalign: error while loading shared libraries: libbz2.so.1.0: cannot open shared object file: No such file or directory
bamleftalign config usegalaxy.org freebayes • 356 views
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modified 10 months ago • written 10 months ago by kry_8 • 10
1
gravatar for Jennifer Hillman Jackson
10 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

This is recently discovered problem with the Freebayes tools (this one included) and we are still working on the correction. Please see the issue tracking ticket for the workaround (use an earlier tool version). When the dependencies are fixed, the ticket will be updated/closed out.

https://github.com/galaxyproject/usegalaxy-playbook/issues/79

Thanks for reporting the problem! Jen, Galaxy team
ADD COMMENT • link written 10 months ago by Jennifer Hillman Jackson ♦ 25k
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gravatar for kry_8
10 months ago by
kry_8 • 10
kry_8 • 10 wrote:

Thanks!!!! Sorry to be annoying but what about: Exit code 127 () bamleftalign: error while loading shared libraries: libbz2.so.1.0: cannot open shared object file: No such file or directory
ADD COMMENT • link written 10 months ago by kry_8 • 10
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