Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Dataset Error An error occured while running the tool upload1.
0
gravatar for mbt
12 weeks ago by
mbt • 0
mbt • 0 wrote:

Hi,

I was able to download my data into the history panel

~63 Gb 20 shown 63 hidden

all files are highlighted in red with x mark. All have the following associated error Dataset Error An error occured while running the tool upload1.

I'm not sure what the problem ... not enough space...fastq.gz. I can see the sequence when I click on the file. text window states that only the first megabyte of data is shown.

Mike
upload ftp galaxy • 123 views
ADD COMMENT • link •
modified 12 weeks ago by Jennifer Hillman Jackson ♦ 25k • written 12 weeks ago by mbt • 0
0
gravatar for Jennifer Hillman Jackson
12 weeks ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

This can occur when the Uploaded data is too large for file-browsing upload or if the connection is somehow interrupted. Galaxy Main is configured to handle data that is a bit over 2 GB in size when uploading local browsed files, but most Galaxy servers still have a hard limit at 2 GB.

Data over about 1 GB would benefit from being loaded by FTP on any Galaxy server. This would be especially important if your internet connection is slower.

Most fastq data is much larger than 2 GB in size. Try using FTP. For the how-to, please see the Loading Data FAQ here for full details, including a tutorial: https://galaxyproject.org/support/loading-data/

If you still have problems after trying FTP, where are you using Galaxy?

  • If at Galaxy Main https://usegalaxy.org, we can help, write back in a reply describing the data in more detail (data size, data type, data loading methods you tried, the results from those) and we can troubleshoot from there.

  • If at another public/private Galaxy server, you'll need to contact the administrators of that server directly (each is independent). Contact information is generally on the home page of the server, or you can check here to see if they included it: https://galaxyproject.org/public-galaxy-servers/

Thanks! Jen, Galaxy team
ADD COMMENT • link written 12 weeks ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 173 users visited in the last hour