Question: Reference genome of Arctica islandica
1
gravatar for Aurore.Levivier
4.5 years ago by
Canada
Aurore.Levivier • 10 wrote:

Hello,

I work on mitochondrial genome of Bivalvia. I would like to align reads generated by NGS platform Illumina. I would like use "Map with Bowtie for Illumina" but no reference genome corresponds to my data. Is it possible to add the mitochondrial genome of Arctica islandica : http://www.ncbi.nlm.nih.gov/nuccore/NC_022709.1 ; and the mitochondrial genome of Venerupis philippinarum : http://www.ncbi.nlm.nih.gov/nuccore/NC_003354.1 on Galaxy?

Thank you for your help.

Bests regards

Aurore

alignment job bowtie • 1.0k views
ADD COMMENT • link • modified 4.5 years ago by Jennifer Hillman Jackson ♦ 25k • written 4.5 years ago by Aurore.Levivier • 10
1
gravatar for Jennifer Hillman Jackson
4.5 years ago by
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hi Aurore,

This is the perfect case to use a Custom Reference Genome. Here are instructions for how to use: https://wiki.galaxyproject.org/Support#Custom_reference_genome

Any questions, let us know.

Best, Jen, Galaxy team

ADD COMMENT • link written 4.5 years ago by Jennifer Hillman Jackson ♦ 25k
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