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• Reference genome of Arctica islandica
  Hello, I work on mitochondrial genome of Bivalvia. I would like to align reads generated by NGS ...
• Request Reference genome in Galaxy Bowtie for Illumina?
  How do I request a reference genome in galaxy bowtie for illumina. I need to use the Burkholderia...
• How do I add my own reference genome for mapping RNA-seq data
  How Do I Add my own reference genome for mapping RNAseq data? Below is the link for the referenc...
• add genome in galaxy
  Hi, how is possible to add a genome in Galaxy? this is the link   http://www.ncbi.nlm.nih.gov/...
• Bowtie Raw Input
  Hi There Im trying to map RNA-seq data to a reference genome in Galaxy (Main instance) using bot...
• Re: Mitochondrial Transcripts
  Hello Tim, The problem is either that the reference genome build used does not contain the mitoc...
• No chicken reference genome (galGal4) for Bowtie2 - map reads against reference genome
  Hi, I cannot find the chicken (galGal4) reference genome when I run Bowtie2 - map reads against ...
• BWA for Illumina using custom genome
  Hi I have uploaded the fasta files (3 chromosomes) of my genome of interest. I downloaded FASTA ...
• Error with Bowtie2 mapping against rhesus monkey reference genome
  Hello! I am trying to align a fastq file (fastqsanger) with Bowtie2 against the built-in referenc...
• TopHat Dataset generation errors
  Hello I'm trying to use TopHat in public server for alignment my RNA-seq data that generated fro...
• Bowtie 2 output read
  I am using galaxy platform to run Bowtie 2. I have illumina paired end reads (file#1 and file#2)...
• Reference genome absent
  Dear Biostar, For mapping our paired end reads against horse, we are unable to find a reference ...
• problem in using bowtie 2 for pi RNA
  I am using Mouse piRNA genes (450 mb) as a reference genome and bowitie 2 is running from moretha...
• NCBI genome to Galaxy
  I am trying to download Brachypodium distachyon strain Bd21 chromosome 2, Brachypodium_distachyo...
• Need help with "MPileup" tool
  I am trying to get SNPs and indels from a bowtie 2 on Illumina reads matched to the sinorhizobium...
• Request To Add Reference Genome
  Hello Galaxy Team, I am writing to request that the genome of *Sinorhizobium meliloti *1021 be a...
• Need help with "Tophat2" tool
  Is there no yeast genome as a reference for using Tophat2 in Galaxy? I only found sc2 and sc3 it ...
• Could you add sheep reference genomes into the database?
  Could you add reference genomes into the database? Ovis aries (sheep) Lineage: Eukaryota[1961]; M...
• Add a reference genome
  Dear Mr./Ms., I just want to use HISAT in RNA-Seq, and I want to use Pseudomonas aeruginosa ...