Question: Please add reference genome to Bowtie 2
gravatar for jkherman
3.2 years ago by
United States
jkherman0 wrote:

I would like to map my reads to a reference genome that is not available in the pull-down menu of Bowtie 2.


It says to "contact the galaxy team"


The reference genome I am using is:


Bacillus subtilis subsp. subtilis str. 168 chromosome  (Refseq)

-Jen Herman

bowtie galaxy • 691 views
ADD COMMENTlink modified 3.2 years ago by Jennifer Hillman Jackson25k • written 3.2 years ago by jkherman0
gravatar for Jennifer Hillman Jackson
3.2 years ago by
United States
Jennifer Hillman Jackson25k wrote:


Use the genome as a Custom Reference Genome/Build for access to it right now. Instructions are in the Galaxy Support wiki, Section 2.15

Smaller genomes such as yours work very well with this method.

Best, Jen, Galaxy team

ADD COMMENTlink written 3.2 years ago by Jennifer Hillman Jackson25k
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