Question: Reference Genome In Lastz
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gravatar for Murphy, Caitlin N
5.8 years ago by
Murphy, Caitlin N • 10 wrote:
I'm trying to map a series of short sequencing reads from a clinical isolate of Klebsiella pneumoniae to the Klebsiella pneumoniae MGH 78578 genome which is found on NCBI. This reference genome is not listed under mapping Lastz, which it says I should contact the galaxy team if that is the case. I'm new at all this and trying to upload the reference genome myself, but I am new at all this and any help would be amazing. Thanks, Caitlin Murphy
galaxy • 858 views
ADD COMMENT • link • modified 5.8 years ago by Jennifer Hillman Jackson ♦ 25k • written 5.8 years ago by Murphy, Caitlin N • 10
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gravatar for Jennifer Hillman Jackson
5.8 years ago by
United States
Jennifer Hillman Jackson ♦ 25k wrote:
Hello, The quickest way to use a new, small genome such as this one is use it as a custom reference genome with the tool. Instructions are here: http://wiki.galaxyproject.org/Support#Custom_reference_genome Best, Jen Galaxy team -- Jennifer Hillman-Jackson Galaxy Support and Training http://galaxyproject.org
ADD COMMENT • link written 5.8 years ago by Jennifer Hillman Jackson ♦ 25k
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