Hello, I'm starting to use Galaxy, and I'm trying to generate vcf and BAM files from my Fastq (paired end). I'm trying to align with BWA, I used BWA for Illumina to map the fastq files of one patient, I chose the hg19 canonical as reference, and trimmed both fastq files (FastQ trimmer by column) before the alignment. However the alignment never stop running, I waited 2 days in the weekend and after this I deleted. On Monday I started to running with my Lab's internet (which is faster then mine, but still a little slow), the alignment is still running for more the 24 hours... Is it normal to take all this time? I'm using my notebook (Dell, 4GB, i3). I already tried to refresh the history, but the status never change.
I appreciate the help,