Question: Rattus Norvegicus Reference Genome
gravatar for Matthew Girgenti
5.3 years ago by
Matthew Girgenti10 wrote:
Hi I'm currently using the Galaxy pipeline to analyze my illumina chip-seq data. When I try to use "NGA: Mapping>Map with Bowtie for Illumina" to map my reads there is no rat reference genome. I says I should contact galaxy. Should I simply upload the genome to proceed with analysis? Thanks Matt
alignment bowtie • 1.1k views
ADD COMMENTlink modified 5.3 years ago by Jennifer Hillman Jackson25k • written 5.3 years ago by Matthew Girgenti10
gravatar for Jennifer Hillman Jackson
5.3 years ago by
United States
Jennifer Hillman Jackson25k wrote:
Hello Matt, If you are using the public Main Galaxy instance or a Cloud Galaxy AMI, the genome should be available. But on a local instance, reference genomes need to be set up. These are the instructions: FTP_login_resolution If you are on a local, you will probably want to start asking questions about local set-up on the mailing list and also consider subscribing/following it. Take care, Jen Galaxy team -- Jennifer Hillman-Jackson Galaxy Support and Training
ADD COMMENTlink written 5.3 years ago by Jennifer Hillman Jackson25k
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