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• What to write in "Using reference genome" and "Annotation Regions"sections ?
  Hey, I am trying to use GATK through Galaxy and trying to call variants from my vcf file. "Selec...
• Error fetching reference genome (from History or URL)
  HI, I'm trying to get a reference genome of tomato, I have tried to add it from History (fasta f...
• mycobacterium tuberculosis reference genome
  Hi,    Can we have mycobacterium tuberculosis H37rv genome in the reference genome list to map ...
• Downloading A Reference Genome: Saccharomyces_Cerevisiae_S288C_Sgd2010
  We have mapped our ABI SOLiD reads to the "Yeast (Saccharomyces cerevisiae) str. S288C: Saccharom...
• Genome source from history in SnpEff
  Hello, I am using SnpEff in Galaxy to add variant information to my vcf file. Please let me ask 2...
• Need help with "aaChanges" tool
      Hi, When I enter in files for SNP dataset and Gene dataset, I always get the error "Sequen...
• Reference genome for Trypanosoma brucei 927 strain
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• Cannot select the S. cerevisiae reference genome (sacCer3) for "Map with Bowtie for Illumina" in a saved workflow
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• Feature Update: Expanded Reference Genomes For Ngs Tools
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• Problem using bowtie2
  Hi everyone I´m Miguel, I´m using galaxy for a scholar research. I´m having a problem using bow...
• Data Managers not containing uploaded data? (hg38 missing)
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• Cuffmerge - "Use Sequence" Option.
  Hi, Can anyone shed light on what the "use sequence" parameter (Y/N) in Cuffmerge is doing? The C...
• GATK 2.8 reference genome and "data_manager_gatk_picard_index_builder"
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• Error with Bowtie2 mapping against rhesus monkey reference genome
  Hello! I am trying to align a fastq file (fastqsanger) with Bowtie2 against the built-in referenc...
• Reference genome: no options available - use Custom reference genome
  Hi, I am using galaxy and in particular a modified version of a workflow that I found on usegala...