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• Trinity, Unicycler Job Error "Remote job server indicated a problem running or monitoring this job."
  When attempting Trinity assemblies with Trimmomatic paired end files, the run fails and I receive...
• Trinity "Exceeded step memory limit" error?
  Hi, I'm trying to assemble a de novo transcriptome using ~270 million paired end reads in Trinit...
• Is Trinity currently working?
  I'm trying to run Trinity but keep receiving the following error message: "Remote job server indi...
• Trinity + Unicycler assembly failures at https://usegalaxy.org
  Hi administrators, I tried to perform trinity assembly but an error has occurred "Remote job ser...
• Trinity Error, job did not complete
  Hello, I asked a question last week regarding my Trinity assembly. It would not start the run (a...
• Probem with the Trinity de-novo assembly for big dataset (128GB)
  I had 48 paired end samples, I concatinae all the 24 forward and reverse paired separately and tr...
• Trinity job not running
  Hi, I've been having a lot of trouble with Trinity. I'm trying to do de novo assembly with paired...
• Trinity still not running
  Hello, Trinity is still not working, job is waiting to run for two days. Magda
• JOB WAITING TO RUN
  I have been trying to run a Trinity job for two days and it hang with the "waiting to run" status...
• Trinity on queue
  Hello, My jobs for Trinity have been on queue for a week. The jobs are still waiting to be run....
• Trinity is not working..again?
  Hi all! Apparently there are troubles with trinity, again. The output of Trinity is an empty fi...
• Trinity - De novo transcriptome assembly
  Jobs submitted to Trinity for de novo assembly at Galaxy main hang in "This job is waiting to run...
• Trinity with multiple datasets
  Hello, I am running trinity on 4 data sets (2 left reads, 2 right reads) and I want it to be com...
• set_environment fails to set up Trinity path
  I have a local galaxy instance on which I am trying to run Trinity. I have the following in my ba...
• Trinity jobs stalled at http://usegalaxy.org
  Hello, my trinity job is still waiting to run (for two days). Are there still some problems with ...
• empty file returned after Trinity run
  After atempting to run Trinity (3rd time!) I received the following log: -------------- Trinity ...
• Trinity on cloud
  Hi Galaxy Experts, I am doing RNA seq analysis from about large number of datasets. I have creat...
• Trinity- error setting metadata
  Hello, I was finally able to get Trinity to run, but I've encountered an error. => "An error ...
• Trinity error on usegalaxy.org
  Hello, I am running the trinity on usegalaxy.org , and I got an error message as below. workdir ...
• Trinity
  I want to run Trinity on the "test" instance of Galaxy, but there seems to be a problem. The anal...
• Long queue time for Trinity?
  I’ve had all my Trinity assembly jobs queued for several days, any idea when these might start ru...
• Trinity "OutOfMemoryError: GC overhead limit exceeded"
  Hello, I am trying to use Galaxy Trinity to assemble a set of stranded paired-end reads (two 1.4...
• cufflink jobs in queue for 3 days
  Hello, I had set up a cufflink job saturday morning. I thought it may have been an error on my e...
• Trinity not running- still
  Hi, I've been trying to run Trinity with my data for more than a month now. Currently, it's bee...