Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Manipulating NGS data with galaxy tutorial
0
gravatar for lawrencerushdi
6 months ago by
lawrencerushdi • 0
lawrencerushdi • 0 wrote:

I am trying to follow the tutorial called "Manipulating NGS data with Galaxy", i have been able to follow up until the multiQC step. I have been able to get a green history from this task. However, I am unable to see the "eye" icon on the "stats" dataset. I just see 3 items associated with the data set "fastqc, general stats, and sources" is there something I am doing incorrectly? Or is this a premium option or something similar?

thank you for any help
view multiqc galaxy dataset • 288 views
ADD COMMENT • link •
modified 6 months ago by Jennifer Hillman Jackson ♦ 25k • written 6 months ago by lawrencerushdi • 0

Are you working at Galaxy Main https://usegalaxy.org? If so, this problem has been noticed before but I haven't checked it after the recent updates. Please state where you are working, and meanwhile, I'll rerun the test. This was a display problem before, and it should be an easy fix if this is still present or regression problem.

Thanks! Jen, Galaxy team

ADD REPLY • link written 6 months ago by Jennifer Hillman Jackson ♦ 25k
0
gravatar for Jennifer Hillman Jackson
6 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Ok, the problem is still there for MultiQC (Galaxy Version 1.5.0) as installed at Galaxy Main.

The issue has to do with the display of the 'webpage" output. We'll get this fixed. It is a server configuration issue, so if this is occurring on another server, let us know. We can explain the details of how to configure this correctly so you can share it with the admins of that other server, or so you can get this configured yourself if working at your own Galaxy.

For the "stats" output, there is no direct display for a composite dataset. The statistics are contained within the three included outputs and each displays fine from my test. This was likely your original confusion, but I wanted to test the other known item first, then confirm that the display for these were not impacted.

Thanks for reporting the problem! Jen, Galaxy team
ADD COMMENT • link written 6 months ago by Jennifer Hillman Jackson ♦ 25k

The MultiQC display is fixed, thanks! Jen

ADD REPLY • link written 6 months ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 171 users visited in the last hour