Question: DEPRECATED tools in Galaxy
gravatar for aliesmaili
2.0 years ago by
aliesmaili40 wrote:

Hi, Nearly most of the tools have been listed under "DEPRECATED" in Galaxy main instance ( I just wonder what that means? I am aware of "GATK Tools" but not sure why the others have been listed here. Cheers, Ali

DEPRECATED NGS: GATK Tools (beta) BEDTools NGS: SAMtools CloudMap NGS: Variant Analysis Genome Diversity NGS: RNA Analysis NGS: VCF Manipulation EMBOSS Multiple Regression Regional Variation NGS: Picard NGS: BamTools NGS: RNA Structure Datamash Multiple Alignments STR-FM: Microsatellite Analysis NGS: Peak Calling Metagenomic Analysis Motif Tools NGS: Du Novo NCBI SRA Tools NGS: DeepTools NGS: Gemini NGS: Assembly FASTA manipulation Multivariate Analysis

ADD COMMENTlink modified 24 months ago by Jennifer Hillman Jackson25k • written 2.0 years ago by aliesmaili40
gravatar for Jennifer Hillman Jackson
24 months ago by
United States
Jennifer Hillman Jackson25k wrote:


Good question. There are still some admin maintenance tasks to be completed after the downtime. Expect items in the Tool Panel to be sorted correctly soon.

Thanks for reporting the issue, Jen, Galaxy team

ADD COMMENTlink written 24 months ago by Jennifer Hillman Jackson25k

Update: The tool panel was restored to the original ordering about an hour ago.

ADD REPLYlink written 24 months ago by Jennifer Hillman Jackson25k

The same tools are DEPRECATED again. I believe we just have to be patient and wait until everything goes back to normal?

ADD REPLYlink written 24 months ago by aija.ozola0

I saw this as well last night. It only lasted for a short time. Seems to be back again. I will make sure this is known to the admins here.

All is related to the maintenance in progress. When the banner is removed from the server will be clear to use without running into problems. It can still be used now for some activities successfully.

ADD REPLYlink modified 24 months ago • written 24 months ago by Jennifer Hillman Jackson25k
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