Hi there,
I am hoping to use the BETA tools in Cistrome to analyze RNA-seq data, however I haven't been able to complete the job without receiving an error. I have differential expression data from Cuffdiff and peak calls from MACS2 in bed format as input. I was wondering how I might be able to fix this? Below is the error message I get when running BETA:
cp: cannot stat `BETA_OUTPUT/NA_function_prediction.pdf': No such file or directory
cp: cannot stat `BETA_OUTPUT/NA_uptarget.txt': No such file or directory
cp: cannot stat `BETA_OUTPUT/NA_downtarget.txt': No such file or directory
cp: cannot stat `BETA_
Thank you so much for your help,
Kate