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Question: Error in BETA basic in Cistrome
1
gravatar for katherinedixon4
4.4 years ago by
katherinedixon4 • 10
Canada
katherinedixon4 • 10 wrote:

Hi there,

I am hoping to use the BETA tools in Cistrome to analyze RNA-seq data, however I haven't been able to complete the job without receiving an error. I have differential expression data from Cuffdiff and peak calls from MACS2 in bed format as input. I was wondering how I might be able to fix this? Below is the error message I get when running BETA:

cp: cannot stat `BETA_OUTPUT/NA_function_prediction.pdf': No such file or directory

cp: cannot stat `BETA_OUTPUT/NA_uptarget.txt': No such file or directory

cp: cannot stat `BETA_OUTPUT/NA_downtarget.txt': No such file or directory

cp: cannot stat `BETA_

Thank you so much for your help,

Kate
cistrome beta • 1.6k views
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modified 4.4 years ago by fubar ♦ 1.1k • written 4.4 years ago by katherinedixon4 • 10
3
gravatar for fubar
4.4 years ago by
fubar ♦ 1.1k
Australia
fubar ♦ 1.1k wrote:

Hello

Sorry to say the Galaxy Team doesn't control that server so can't help resolve that error.

Unless the people running Cistrome regularly read this resource, you might have a better chance of getting help by contacting them directly - I think the site owner is probably found via http://liulab.dfci.harvard.edu/

 
ADD COMMENT • link modified 4.4 years ago • written 4.4 years ago by fubar ♦ 1.1k
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