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• How to resolve the reason for job was terminated
  Hello, Recently, I have some RNA-seq data to analysis using Galaxy. Now I have a ...
• How could I get more memory in Galaxy?
  When I run hisat2, the error massage : "This job was terminated because it used more memory tha...
• Error message: This job was terminated because it used more memory than it was allocated
  Hi,  I'm processing exome data (enriched with Nextera kit) in Galaxy. After mapping the reads us...
• Stringtie Merge on dataset failed
  I received the following error message when running stringtie merge: This job was terminated beca...
• Boxplot Visualization Error
  Hello, I'm pretty new for Galaxy. I am running a local Galaxy server on Mac. I tried to draw a bo...
• about compute and correct GC bias
  Hello I am having a trouble running the compute GC bias on a BAM file aligned by BWA-MEM. The err...
• Compute and correct GC bias
  Hello I am having a trouble running the compute GC bias on a BAM file aligned by BWA-MEM. The err...
• TopHat2 run with the error message "The Cluster DRM System has terminated this Job"
  Hello, I use Galaxy regularly, and used TopHat2 earlier without any problem. However, just a day ...
• VCF manipulation and VCFintersect
  This job was terminated because it used more memory than it was allocated. Please click the bug i...
• Disk quota exceed - history quota higher than expected
  Hi, my job was terminated because of disk quota exceeded. The history "dataset" shows 184GB but i...
• Slice VCF not working
  Hello I keep trying to slice a VCF file using a BED file, but every time I get the error "This j...
• Using more memory than what allocated
  I keep getting this message when running cuffdiff "This job was terminated because it used more m...
• MACS2 error in galaxy
  I'm a longtime galaxy user but since they updated MACS2, I keep getting the following error: "Thi...
• bam to VCF
  Hi, I am trying to get all the variants from sequencing data. From fastaq, I got BAM files. Then...
• Error with DiffBind
  I successfully employed Diffbind to compare 5 replicates (control vs treatment) approximately 10 ...
• Memory allocation error while trying to align paired end reads using RNA STAR
  Hi This is my first time using Galaxy for RNA Seq analysis. After uploading and normalizing my r...
• Trinity job not running
  Hi, I've been having a lot of trouble with Trinity. I'm trying to do de novo assembly with paired...
• This job was terminated because it used more memory than it was allocated (new post)
  To Galaxy, I've read on this forum about the proposed solutions to this memory issue. Other than...
• Error in SNPSift Annotate
  Hello, I am trying to annotate variants from Freebayes Output using SNPSift annotate too...
• Reminder: Galaxy Main & Test Server Downtime For Hardware Relocation Thursday, March 14, 2013
  Original Notice Date: Thursday, March 7, 2013 Reminder NoticeDate: Friday, March 8, 2013 Greetin...
• Galaxy Main & Test Server Downtime For Hardware Relocation Thursday, March 14, 2013
  Notice Date: Thursday, March 7, 2013 Greetings Galaxy *Main* & *Test* Users, The *Galaxy* *...
• Tophat jobs exceeding maximum allowed job run time
  Hello, I have a question regarding the mapping of RNA-seq data. I am hitting a wall, because som...