Latest
Open
RNA-Seq
ChIP-Seq
SNP
Assembly
Forum
Planet
All »
Home
Log In
Question: Stringtie Merge on dataset failed
0
gravatar for bkasinat
8 weeks ago by
bkasinat • 0
bkasinat • 0 wrote:

I received the following error message when running stringtie merge: This job was terminated because it used more memory than it was allocated."

I have used 63% of my quota and was wondering if this error was due to the size of the job itself of the amount of space I have remaining?

If it is because of the size of the job, is there any way to run it through galaxy?
rna-seq • 88 views
ADD COMMENT • link •
modified 8 weeks ago by Jennifer Hillman Jackson ♦ 25k • written 8 weeks ago by bkasinat • 0
0
gravatar for Jennifer Hillman Jackson
8 weeks ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

The processing memory used to execute jobs is distinct from your account quota space.

The job may really be too large to execute at the target Galaxy server -- but input and/or parameter problems can also produce this type of error. The latter is more common, so re-reviewing upstream steps and data is worth it to ensure it is not contributing to the failure. Do this before moving to a server with more resources. The job might only fail again, as some input-related tool memory failures will never resolve without fixes/changes, no matter what resources the job is given or where the job is executed (and whether in Galaxy or not).

FAQs: https://galaxyproject.org/support/#troubleshooting

Thanks! Jen, Galaxy team
ADD COMMENT • link written 8 weeks ago by Jennifer Hillman Jackson ♦ 25k
Please log in to add an answer.

Similar posts • Search »

Content
Help
Access
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 16.09
Traffic: 169 users visited in the last hour