Question: Galaxy instance not running pbs jobs
0
connerms • 0 wrote:
I've attempted to configure a fresh galaxy instance to run jobs with the pbs runner. My job_conf.xml file is simply:
<?xml version="1.0"?>
<job_conf>
<plugins>
<plugin id="pbs" type="runner" load="galaxy.jobs.runners.pbs:PBSJobRunner" />
</plugins>
<handlers>
<handler id="main"/>
</handlers>
<destinations default="pbs_default">
<destination id="pbs_default" runner="pbs" />
</destinations>
</job_conf>
Galaxy starts without errors. The libtorque libraries are on the LD_LIBRARY_PATH. I've installed the PBSDebug tool. When I execute that tool, three jobs appear in my history, but they don't execute, they stay gray and nothing happens. I can't find anything in logs. There is no indication that the jobs are being submitted to the scheduler.
Where can I look to find what is broken?
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modified 7 months ago
by
Jennifer Hillman Jackson ♦ 25k
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written
7 months ago by
connerms • 0
