I've attempted to configure a fresh galaxy instance to run jobs with the pbs runner. My job_conf.xml file is simply:
<?xml version="1.0"?> <job_conf> <plugins> <plugin id="pbs" type="runner" load="galaxy.jobs.runners.pbs:PBSJobRunner" /> </plugins> <handlers> <handler id="main"/> </handlers> <destinations default="pbs_default"> <destination id="pbs_default" runner="pbs" /> </destinations> </job_conf>
Galaxy starts without errors. The libtorque libraries are on the LD_LIBRARY_PATH. I've installed the PBSDebug tool. When I execute that tool, three jobs appear in my history, but they don't execute, they stay gray and nothing happens. I can't find anything in logs. There is no indication that the jobs are being submitted to the scheduler.
Where can I look to find what is broken?