Question: Galaxy instance not running pbs jobs
0
gravatar for connerms
3 months ago by
connerms0
connerms0 wrote:

I've attempted to configure a fresh galaxy instance to run jobs with the pbs runner. My job_conf.xml file is simply:

<?xml version="1.0"?>
<job_conf>
    <plugins>
        <plugin id="pbs" type="runner" load="galaxy.jobs.runners.pbs:PBSJobRunner" />
    </plugins>
    <handlers>
        <handler id="main"/>
    </handlers>
    <destinations default="pbs_default">
        <destination id="pbs_default" runner="pbs" />
    </destinations>
</job_conf>

Galaxy starts without errors. The libtorque libraries are on the LD_LIBRARY_PATH. I've installed the PBSDebug tool. When I execute that tool, three jobs appear in my history, but they don't execute, they stay gray and nothing happens. I can't find anything in logs. There is no indication that the jobs are being submitted to the scheduler.

Where can I look to find what is broken?

pbs • 106 views
ADD COMMENTlink modified 3 months ago by Jennifer Hillman Jackson25k • written 3 months ago by connerms0
0
gravatar for Jennifer Hillman Jackson
3 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

Please double check that all configuration settings align with the Admin docs for PBS here: https://docs.galaxyproject.org/en/master/admin/config.html

Thanks, Jen, Galaxy team

ADD COMMENTlink written 3 months ago by Jennifer Hillman Jackson25k
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