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• Chimera.uchime issue in mothur pipeline
  Is there a way that I can see the logfile in real time? I want to check if the uchime step is run...
• Time required for FASTQ split
  How much time will it take to complete FASTQ split on whole transcriptome paired-end data on Gala...
• long running time on freebayes with a bam file
  Hi, I am using Galaxy freebayes to call variants on a WES bam file. It apparently takes very long...
• what is the differences between GigaGalaxy and Galaxy?Why upload data in GigaGalaxy take so much time still unfinished?
  What is the differences between GigaGalaxy and Galaxy? I need to use the tool "NGS:SOAPdenovo2" i...
• how can i upload my data in GigaGalaxy for assembly
  I need to use the tool "NGS:SOAPdenovo" in GigaGalaxy when I upload my data in GigaGalaxy then it...
• cuffmerge for single end and paired end
  is it correct to merge the single end and paired end data together in cuffmerge? if yes then why ...
• Tophat taking too much time
  Is this a server error or data size overload?? Tophat is still running since long time. I got res...
• Data Uploading Time
  Hi, My name Saranga and working for OSU. I just installed a local instant of Galaxy in one of ou...
• tophat job is not finishing
  hi i have run tophat on my sra data(3 files 1.5 gb each) 5 days back.today i found that jobs were...
• Data Uploading Time
  Hi, My name Saranga and working for OSU. I just installed a local instant of Galaxy in one of ou...
• Upload Workflow On Cloudman
  Dear galaxy users, I tried to follow the instruction to see how the workflow worked by using the...
• ERROR- did not complete align.seqs
  Hi, I am working with some samples in mothur, (I am new in mothur and in these subjects); and whe...
• Missing tool dependences with gray install box (Mothur tool)
  Hi, I'm trying to install from tool shed Mothur but every time I got missing tool depenences: **...
• How long does mapping with bowtie in ChIP-Seq take?
  My request has been running for a long time now, when will it be finished? -amh22
• time to run cufflinks
  How long does it take to run cufflinks? It has been submitted for 48 hours and still has the gra...
• Estimating Galaxy On The Cloud Needs For Rnaseq
  Questions: I have been running sets of data for cufflinks/cuffdiff analysis on Galaxy online--I ...
• Mothur make-contigs missing dependencies
  So, this is my first time using Mothur on Galaxy. I am following the protocol https://galaxypro...
• Problems converting a file to FASTA
  Hello! How are you? I am having a hard time converting a file. I have  FASTA formatted sequences...