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• CloudMap Select Variants tool NEVER works
  I've tried multiple times to analyze my WGS data using the CloudMap: Hawaiian Variant Mapping wor...
• About upload fastq file (9.3GB) through FTP
  i have tried to upload my fastq file (9.3GB) through Cyberduck FTP uploader. But, in the "get da...
• getting old tool on usegalaxy.org
  Is there a way that I can go back to older version of Galaxy in usegalaxy.org? I build one compli...
• Uninstall a local instance of Galaxy
  Hi, I installed galaxy locally on my personal macbook for a class and no longer use it. How do I...
• Tophat in Cloudman: missing built-in genome
  Hell all, After several days of struggling, I finally managed to set up a Galaxy instance in Clo...
• Galaxy running for too long
  Hi Everyone, as i made a few 16S workflow i was asked to test Galaxy and see its strengths and we...
• How to get the name of the file (.dat) through the API?
  I'm trying to use Galaxy for the NGS analysis. I'm running it on a server, so I don't use/need th...
• Decompressing files on local galaxy
  HI, I am using local instance of Galaxy. I have uploaded my dataset and they are in fastq.gz fo...
• Downloading Problems From Main Galaxy
  Problem: sometimes incomplete (by incomplete I mean a significantly smaller size that given durin...
• Compare SNP density of genes and intergenic regios
  Hello, I am trying to calculate the SNP density of my Chr genes as well as the SNP density for in...
• Regarding Perl Script
  Hello all, I am a new to GALAXY and am trying to create my own workflow with my own scripts writ...
• Sharing Histories?
  Is it possible to share histories with other collaborators? I'd like them to be able to see my da...
• Run time of processes in Galaxy
  Hello everyone, Where can I see how long did it take for a step that I ran in Galaxy to complete...
• History Deleted so I can't send data to my history list on my working page.
  I can't get my data sent to my history. I have a message which says that my history has been dele...
• Failed Tophat Processing Steps
  Hi, I submitted a sample for Tophat processing on the main Galaxy instance and it seems to me th...
• Reference genome download - a step-by-step please?
  Hi, I know this has been addressed in various posts at different times. However after extensive ...
• GATK pipeline for WGS samples
  Hi, I have a command line script that does GATK analysis - I am now trying to set up a similar w...
• Problem with Mapping
  Hi there, First of all I would like to thank you for providing an amazing web tool for us to ana...
• Group And Hide Steps In History/Workflow
  Hi, it would be really nice if I could take a work flow and save it as a tool. This way one coul...
• Order Of Steps
  Hi, I have two simple questions related to manipulating step history. So, how to change the orde...
• Fwd: Hcc Analysis Pipeline
  Hi Moritz, I'm forwarding your message to galaxy-user mailing list and Jennifer from Galaxy. Betw...
• >90% aligned concordantly 0 times ChIP-seq Bowtie2
  Hi, I know this question have raised many times here and in other forums but I've tried everythi...