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Question: Data Uploading Time
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gravatar for saranga wijeratne
8.1 years ago by
saranga wijeratne • 20
saranga wijeratne • 20 wrote:
Hi, My name Saranga and working for OSU. I just installed a local instant of Galaxy in one of our computers. My question is how long it takes to upload a file of size 4GB from my local disk to local Galaxy? I have been trying to upload this file for 12 hours now.This file is txt file and it contains reads. Any help will be really appreciated. Thank you very much in advance. Saranga
galaxy • 1.2k views
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modified 4.7 years ago by Martin Čech ♦♦ 4.9k • written 8.1 years ago by saranga wijeratne • 20
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gravatar for Nate Coraor
8.1 years ago by
Nate Coraor ♦ 3.2k
United States
Nate Coraor ♦ 3.2k wrote:
Hi Saranga, Files > 2GB generally cannot be uploaded through the browser. This upload may have failed. We are working on better error handling and progress bars for uploads, but in the meantime, I would recommend placing your file on an HTTP or FTP site and uploading by placing the URL to the file in the URL/Text box. --nate
ADD COMMENT • link written 8.1 years ago by Nate Coraor ♦ 3.2k
Hi Saranga here's a workaround using python serve files over http cd data-directory python -m SimpleHTTPServer 9914 open in firefox http://localhost:9914/ copy the urls and paste in galaxy upload file
ADD REPLY • link written 8.1 years ago by Kevin • 150
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gravatar for Martin Čech
4.7 years ago by
Martin Čech ♦♦ 4.9k
United States
Martin Čech ♦♦ 4.9k wrote:
Scott: 15GB file is a candidate for a FTP upload because web browsers can't usually handle this size. FTP server address is usegalaxy.org and credentials are the same you use for Galaxy (you have to use some other client outside of web browser to connect to this FTP server and upload this large file successfully e.gg FileZilla). After you finish uploading your file there you will see it in the upload tool (Get Data / Upload File) on Galaxy (when logged in). Then you will be able to start using it in history. There is an awesome screencast that shows the full process here: http://vimeo.com/75938324 Martin
ADD COMMENT • link written 4.7 years ago by Martin Čech ♦♦ 4.9k
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