Hi, I'm trying to install from tool shed Mothur but every time I got missing tool depenences:
Mothur v1.33 metagenomics tools, Owner jjohnson I have tried several Revision of the tool in the tool shed but the result is the same.
What should I do in order to install it correct?
Hello,
This version of the wrapped tool does not have linked dependencies (this message appears in the Tool Shed when the repository is viewed: http://usegalaxy.org/toolshed).
Instead, try the version by GVL: https://toolshed.g2.bx.psu.edu/view/qfab/package_mothur/150982d8fd53
Thanks, Jen, Galaxy team
hmm, this worked for me not too long ago, I'll see if I can test it again soon, do you get any error message?
Yes, I have uninstalled it, but it was something like file not found or missing file. I have tried it 3-4 times with same output.
hmm, this seems to be a problem with the blast package (package_blast_2_2_26) in the tool shed. The files it tries to download from ncbi seem to have moved (e.g. ftp://ftp.ncbi.nlm.nih.gov/blast/executables/release/LATEST/blast-2.2.26-x64-linux.tar.gz, which doesn't exist anymore)
Hello manekineko,
A college of mine is working really really hard to update all wrappers to make them in line with the iuc standards and to make them depend on the bioconda dependency. Because we're talking about 113 tools it is taking a while but she's already quite far. You can follow the progress at the following url: https://github.com/galaxyproject/tools-iuc/pull/671 don't worry to give feedback and when it's ready don't be shy to test.
Great to see there is interest in these tools!
Youri
I am a total newbie with commands etc. I have a local install of Galaxy. How do I install the Mothur toolsuite? Is this even working? Am I wasting my time ?
Whatever is available in the Main tool shed never really installs, I just get an error:
Mothur v1.33 metagenomics tools jjohnson 040410b8167e Installed, missing tool dependencies
I am totally clueless, and a step-by-step would be helpful.
