Hi, when I run trinity in local galaxy, it is error:
Fatal error: Exit code 2 ()
Possible unintended interpolation of @2 in string at
/home/malab10/software/galaxy/database/dependencies/_conda/envs/__trinity@2.4.0/bin/Trinity line 43.
what can I solve it?
Hello,
This error indicates that not enough memory was given to the job. However, sometimes input formatting problems can also produce this error (by triggering the job to use more memory than it really needs when processing correctly formatted data).
Start by checking how much memory has been given to the job. The requirements are the same as when the tool is used line-command, so the Trinity manual guidelines will apply.
Also check your inputs. How-to is explained in the Support FAQs: https://galaxyproject.org/support/#troubleshooting
For reference, Galaxy Administrator help can be found in these places:
Thanks, Jen, Galaxy team
Trinity includes it's absolute installation path in the main perl script. It uses double quotes for that, which means that perl interprets the "@" contained in the path of the conda environment as a special character (used for string interpolation). To solve this, fix the script by either replacing the double quotes with single quotes or escape the "@" with a backslash.
