Question: PtR differential expression analysis
gravatar for mkiefer
3 days ago by
mkiefer10 wrote:

Is it possible to use/install PtR on a private Galaxy-Server? I have installed trinity (Rev. 22) from the toolshed. Is there another package I'd have to install?

ADD COMMENTlink modified 1 day ago • written 3 days ago by mkiefer10
gravatar for Jennifer Hillman Jackson
2 days ago by
United States
Jennifer Hillman Jackson25k wrote:


This is the repository in the ToolShed for the Galaxy wrapped tool version. Install it as you would any other tool repo:

The tool is also available at the Galaxy EU public server

  • RNA Analysis > RNASeq samples quality check for transcript quantification

Both sites can be searched with the keyword "trinity" to find all available wrapped components from the Trinity suite.

Thanks! Jen, Galaxy team

ADD COMMENTlink written 2 days ago by Jennifer Hillman Jackson25k
gravatar for mkiefer
1 day ago by
mkiefer10 wrote:

Thank you very much. Finding the right (i.e. complete and working) tools from the shed is slightly confusing for the newcomer...

Cheers, Markus

ADD COMMENTlink written 1 day ago by mkiefer10
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