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Question: PtR differential expression analysis
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gravatar for mkiefer
3 days ago by
mkiefer • 10
mkiefer • 10 wrote:

Is it possible to use/install PtR on a private Galaxy-Server? I have installed trinity (Rev. 22) from the toolshed. Is there another package I'd have to install?

rna-seq differential expression ptr trinityrnaseq • 39 views
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modified 1 day ago • written 3 days ago by mkiefer • 10
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gravatar for Jennifer Hillman Jackson
2 days ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

This is the repository in the ToolShed for the Galaxy wrapped tool version. Install it as you would any other tool repo:

The tool is also available at the Galaxy EU public server https://usegalaxy.eu:

  • RNA Analysis > RNASeq samples quality check for transcript quantification

Both sites can be searched with the keyword "trinity" to find all available wrapped components from the Trinity suite.

Thanks! Jen, Galaxy team
ADD COMMENT • link written 2 days ago by Jennifer Hillman Jackson ♦ 25k
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gravatar for mkiefer
1 day ago by
mkiefer • 10
mkiefer • 10 wrote:

Thank you very much. Finding the right (i.e. complete and working) tools from the shed is slightly confusing for the newcomer...

Cheers, Markus

ADD COMMENT • link written 1 day ago by mkiefer • 10
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