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• Jobs are not running
  I am using bamCoverage from deepTools for 7 datasets. Jobs have been created more than 24 hours a...
• Reason "The job is waiting to run" idle for 3 hours
  The job was created at this below time, kindly suggest what needs to be done in such a case. Cre...
• PAUSE 3 results not displaying
  Hello, I'm quite new to Galaxy and I have been looking around the tutorials to try and find an a...
• usegalaxy.org job length
  Greetings, I used the join command at usegalaxy.org and would like to know how long the job ran:...
• BWA-MEM mapping Taking longer time
  Hi Folks, I am trying to run BWA-MEM mapping, its taking longer time. Can you please look into i...
• Cuffdiff Changes
  Hi, I am wondering why Cuffdiff suddenly gives many more significant DE genes? I have used same ...
• Galaxy SGE Cluster, Planemo testing?
  Hi, Is it possible to use "planemo test" functionality on an SGE cluster? I can correctly run a ...
• API: get /tools/{tool-id}/build gives Uncaught exception error (but depends on galaxy server)
  Hello! I am sending a GET request to /api/tools/{tool-id}/build with valid key and history_id pa...
• self hosted galaxy instance hicexplorer commands not found
  Hi, We have a self hosted galaxy instance running on release_16.04 (0ba99fe246099cc1827f71f2722d2...
• Cuffdiff Fatal error: Exit code 1 () Error: number of labels must match number of conditions number of labels must match number of conditions
  Hi! I ran into a problem using Cuffdiff. (I am using a local version of galaxy). When I try to ...
• Galaxy API: Tool build data missing html for input fields
  Hello, I noticed the following when using the api for getting tool info /api/tool/{tool-id}/bu...
• Usage of $__app__ for galaxy tool metadata retrieval
  Hi everyone, I have been looking for a way to get at the metadata associated with history items u...
• Trinity run ended with error
  Hello, My trinity run ended with an error saying "tool error An error occurred with this dataset...
• Download History galaxy API
  Hi I am using the python bioblend API to download the history of workflow. the first question is ...
• Galaxy API: Re-running job causes error
  Hello, I am using the galaxy API to rerun a tool doing a POST to /api/tools with action set to "...
• set_environment fails to set up Trinity path
  I have a local galaxy instance on which I am trying to run Trinity. I have the following in my ba...
• Galaxy Tool API - how to submit a non-specific file reference
  I'm generally able to submit a Galaxy job through the API (POST /api/tools) where the input is a ...
• Uploading mgf files throws error (Galaxy-P workflow)
  Dear group, uploading an mgf formatted file results in the error below and the file is not uploa...