Similar posts • Search »

• Unicycler bacterial genome assembly result visualization
  I have used Unicycler to assembly bacteriala genome, but I am unable to view the unicycler final ...
• Paired collection option in Unicycler
  I did sequencing twice for one isolate. So, I have two data datasets (four fastq files). I am won...
• genome de novo assembly
  Hello, I have a paired-end 150 bp genome sequencing data with a different end quality.According ...
• Trying to Assemble SRAs with Unicycler
  I'm trying to assemble SRA reads from NCBI and I'm getting the error "Remote job server ind...
• how to generate fastQ format data to output for assembly
      I trimmed the data in fastQ format, and wanted to output the data again in fastQ format and...
• Unicycler genome assembly failure
  Hi all, I have some Illumina reads and Nanopore reads I'd like to assemble using Unicycler. I u...
• Quality Assessment of RNA de novo assemble (trinity) without reference genome
  Hello, Are there any tools within the galaxy tool shed that would give me a quality assessment o...
• Length of reads in a RNAseq experiment
  Should all the reads of my experiment be of the same length if I am going to perform a de novo a...
• Error with "Trim leading or trailing characters" tool
  Hi all, I have been trying to trim my fastq files, and I am running into problems. I used the "T...
• unicycler input files
  hi, I am trying to assemble a plasmid using unicycler. I have illumina reads (single) in fastq.gz...
• Trinity and Unicycler jobs queued for a long time?
  I have had several Unicycler and Trinity jobs that seem to be stuck waiting for a long time. Trie...
• Error with Unicycler at Galaxy Main https://usegalaxy.org
  Dear Biostars Members, I shall kindly ask a question considering bacterial genome assembly with ...
• Assembly tools will not run
  I am trying to run the Unicycler assembler on a fastq paired-end dataset (groomed and joined or u...
• Create assembly with Unicycler- not working
  I have used the Create assembly with Unicycler tool for genome assembly from Illumina paired end ...
• Trimmomatic and Trim Galore are not working.
  I am performing an RNA-seq and am trying to trim adapter sequences with Trim Galore. When I made ...
• Trinity with multiple datasets
  Hello, I am running trinity on 4 data sets (2 left reads, 2 right reads) and I want it to be com...
• Unicycler job has been waiting since Monday evening (11/27/2017). Am I doing anything incorrectly?
  So I have uploaded my sequence data as of Monday evening, as the title says, but the job has been...
• Contig assembly on MicrobesNG data
  Hello, I recently had the genome of the bacteria that I am working on sequenced by MicrobesNG. T...