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Question: how to generate fastQ format data to output for assembly
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gravatar for xuemeis
3.1 years ago by
xuemeis • 0
United States
xuemeis • 0 wrote:

 

 

I trimmed the data in fastQ format, and wanted to output the data again in fastQ format and submitted for assembly. How can I do it?

 

 

 
fastq • 776 views
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modified 3.1 years ago by Jennifer Hillman Jackson ♦ 25k • written 3.1 years ago by xuemeis • 0
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gravatar for Jennifer Hillman Jackson
3.1 years ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

Trimming data should not alter the datatype. My guess is that you need to have a different or more specific type fastq datatype assigned. The version most Galaxy wraps require is fastqsanger. Here is how to confirm the current sub-type, transform to fastqsanger, or reassign the datatype to fastqsanger (sometimes all that is needed - but double check!):

https://wiki.galaxyproject.org/Support#Dataset_special_cases

Best, Jen, Galaxy team
ADD COMMENT • link written 3.1 years ago by Jennifer Hillman Jackson ♦ 25k
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