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Question: FASTQ quality trimmer
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9 months ago by
some • 0
some • 0 wrote:

I had a mutant and wild type FASTQ data of a mutant yeast strain. How can I perform FASTQ quality trimmer to get quality for each base > 10? How to identify mutations in mutant file which are not in wild type?
variant galaxy qa tutorials • 367 views
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modified 9 months ago by Jennifer Hillman Jackson ♦ 25k • written 9 months ago by some • 0
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9 months ago by
Jennifer Hillman Jackson ♦ 25k
United States
Jennifer Hillman Jackson ♦ 25k wrote:

Hello,

FastQC > Trimmomatic is a common choice for QA.

Galaxy tutorials for variant analysis are here: https://galaxyproject.org/learn/. Please also see: https://biostar.usegalaxy.org/p/26130/#26140

Thanks! Jen, Galaxy team
ADD COMMENT • link written 9 months ago by Jennifer Hillman Jackson ♦ 25k
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