Question: How To Trim Sequences With Low Quality Scores
0
Hoang, Thanh • 200 wrote:
Hi guys,
I did quality control on my RNA-seq data using FastQC. In the report
for
Per base sequence quality, there are some base positions with the
quality
scores less than 20 ( see attached picture) . I am just wondering if
there
is any way to remove these?
I looked at the FASTQ Quality
Trimmer<https: main.g2.bx.psu.edu="" tool_runner?tool_id="fastq_quality_t" rimmer="">
but
am not sure if this is the right tool to use and how to use the
parameter
settings?
Best regards
Thanh
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modified 5.4 years ago
by
Jennifer Hillman Jackson ♦ 25k
•
written
5.5 years ago by
Hoang, Thanh • 200
