Question: FASTQ quality trimmer
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gravatar for some
8 months ago by
some0
some0 wrote:

I had a mutant and wild type FASTQ data of a mutant yeast strain. How can I perform FASTQ quality trimmer to get quality for each base > 10? How to identify mutations in mutant file which are not in wild type?

variant galaxy qa tutorials • 295 views
ADD COMMENTlink modified 8 months ago by Jennifer Hillman Jackson25k • written 8 months ago by some0
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gravatar for Jennifer Hillman Jackson
8 months ago by
United States
Jennifer Hillman Jackson25k wrote:

Hello,

FastQC > Trimmomatic is a common choice for QA.

Galaxy tutorials for variant analysis are here: https://galaxyproject.org/learn/. Please also see: https://biostar.usegalaxy.org/p/26130/#26140

Thanks! Jen, Galaxy team

ADD COMMENTlink written 8 months ago by Jennifer Hillman Jackson25k
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